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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36568910_36569106_R

Intron Information:

Intron Rank:
143100
Intron Class:
major
Intron Phase:
Intron Coordinates:
36568910 - 36569106
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATCTCTCAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
84.3
29.6
Major BPS
80
0.75
1
78.6
31
Major PPT
81.6
0.71
0.7
77
25
Minor 5ss
42.7
-0.8
3
58.2
46.4
Minor BPS
56.8
0.07
1.6
60.93
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024334
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024812
36567230 - 36569336
2107