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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36588559_36589116_R

Intron Information:

Intron Rank:
138648
Intron Class:
major
Intron Phase:
Intron Coordinates:
36588559 - 36589116
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTTATT
5'SS Class:
major
3'SS Sequence:
TTCATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCATTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
75.8
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.3
0.86
0.7
83.3
31.7
Minor 5ss
36.7
-1.5
3
51.9
44.6
Minor BPS
55.2
0.16
1.6
67
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022097
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028339
36587504 - 36589589
2086