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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36607379_36607983_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36607379 - 36607983
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
ATTTTCTATCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTTTCTATCC
Flanking Amino Acid:
KVRQSPISPIRSPVVAGAVV
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82.2
0.72
0.9
74.6
39.7
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
50.7
0
1.9
67.63
38

Associated Gene:

Gene:
GALNT15
Ensembl Gene ID:
ENSAPLG00000010884
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011345
36592880 - 36616534
23655