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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36608102_36609050_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36608102 - 36609050
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ACCGGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TGCTCCTTCACC
Flanking Amino Acid:
GAENLELSIRTWLCGGSVEI
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.5
37.3
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
66.3
0.37
1
61
44.1
Minor 5ss
34.3
-1.8
2.9
37.3
39.7
Minor BPS
68.6
0.57
1.8
75.07
41.7

Associated Gene:

Gene:
GALNT15
Ensembl Gene ID:
ENSAPLG00000010884
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011345
36592880 - 36616534
23655