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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36633099_36633565_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36633099 - 36633565
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TTGCTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CCAACTAAAACT
Flanking Amino Acid:
SLILRVIYDQEQFMRDEVIA
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
74.1
0.54
0.9
66.1
40.8
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
44.5
-0.3
1.9
57.9
45

Associated Gene:

Gene:
DPH3
Ensembl Gene ID:
ENSAPLG00000008234
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008540
36633033 - 36633908
876