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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36633099_36633800_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36633099 - 36633800
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TTGCTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
CCAACTAAAACT
Flanking Amino Acid:
PCGDRFLITREQFMRDEVIA
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
60.3
40.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
74.1
0.54
0.9
66.1
40.8
Minor 5ss
35.6
-1.6
3.5
42.4
44.7
Minor BPS
44.5
-0.3
1.9
57.9
45

Associated Gene:

Gene:
DPH3
Ensembl Gene ID:
ENSAPLG00000008234
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035207
36633033 - 36633908
876