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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36637351_36637621_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36637351 - 36637621
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTAT
5'SS Class:
major
3'SS Sequence:
CTTTGTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
GTTGTCAAAATG
Flanking Amino Acid:
HSAFCYCTANGTLKSKRKMD
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.1
74.9
38.1
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
82.1
0.72
0.9
76.3
37.7
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
44.5
-0.5
2
52.07
43.1

Associated Gene:

Gene:
OXNAD1
Ensembl Gene ID:
ENSAPLG00000008159
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008491
36636580 - 36650395
13816