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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36646653_36649447_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36646653 - 36649447
Intron Length:
2795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAACATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTGTGTTTAACA
Flanking Amino Acid:
AKNTKELLFKKNILGLMNAF
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.8
0.62
0.9
70.2
39.7
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
63.6
0.42
1.8
71.61
40.9

Associated Gene:

Gene:
OXNAD1
Ensembl Gene ID:
ENSAPLG00000008159
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008491
36636580 - 36650395
13816