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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36649557_36650240_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36649557 - 36650240
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTTTTCATC
Flanking Amino Acid:
ICEELQPHVTEGRISEKDLE
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
88.8
0.87
0.7
90.1
24.5
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
64.3
0.43
1.7
77
33.7

Associated Gene:

Gene:
OXNAD1
Ensembl Gene ID:
ENSAPLG00000008159
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008491
36636580 - 36650395
13816