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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36660753_36662154_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36660753 - 36662154
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTCATTC
Flanking Amino Acid:
VLPTPIVKTNREGNLSTKQI
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
30.3
-2.3
3.3
39.2
46.3
Minor BPS
45.4
-0.3
1.9
60.24
39.2

Associated Gene:

Gene:
RFTN1
Ensembl Gene ID:
ENSAPLG00000007977
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026838
36655209 - 36715557
60349
ENSAPLT00000025399
36657231 - 36716083
58853
ENSAPLT00000017192
36655209 - 36711622
56414
ENSAPLT00000008304
36657231 - 36714031
56801
ENSAPLT00000046297
36655209 - 36718343
63135