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Intron Name: Anas_platyrhynchos_platyrhynchos_2_36662259_36672457_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36662259 - 36672457

Intron Length:

10199

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

ATGATGTTAACT

Flanking Amino Acid:

IVVEQWTVLKGAEVQTDYVP

Intron Amino Acid Position:

387

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.85

0.9

76.4

39.6

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

83.7

0.76

0.7

77.7

31.1

Minor 5ss

35.2

-1.7

3.5

48.8

47.4

Minor BPS

0.24

2.1

74.5

42.4

Associated Gene:

Gene:

RFTN1

Ensembl Gene ID:

ENSAPLG00000007977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025399

36657231 - 36716083

58853

ENSAPLT00000017192

36655209 - 36711622

56414

ENSAPLT00000008304

36657231 - 36714031

56801

ENSAPLT00000046297

36655209 - 36718343

63135

ENSAPLT00000026838

36655209 - 36715557

60349