Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36672574_36680227_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36672574 - 36680227

Intron Length:

7654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGGAAA

5'SS Class:

major

3'SS Sequence:

TGCGTTTTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCGTAAC

U12 Branch Point Sequence:

TTACTCGTAACC

Flanking Amino Acid:

NAIFSLGMVNDSFHGTTDGV

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

69.3

36.5

Major BPS

61.9

0.3

1.2

63.6

40.3

Major PPT

77.2

0.61

0.9

71.4

38.4

Minor 5ss

37.8

-1.4

3.1

44.4

45.6

Minor BPS

57.9

0.23

72.36

38.5

Associated Gene:

Gene:

RFTN1

Ensembl Gene ID:

ENSAPLG00000007977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025399

36657231 - 36716083

58853

ENSAPLT00000017192

36655209 - 36711622

56414

ENSAPLT00000008304

36657231 - 36714031

56801

ENSAPLT00000046297

36655209 - 36718343

63135

ENSAPLT00000026838

36655209 - 36715557

60349