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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36680432_36684185_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36680432 - 36684185
Intron Length:
3754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TACTTTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTGTCTTACTC
Flanking Amino Acid:
PARGSKPLTGKTEIFALFNK
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
72.9
0.52
0.9
73.8
36.6
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
55.8
0.16
1.7
66
40.4

Associated Gene:

Gene:
RFTN1
Ensembl Gene ID:
ENSAPLG00000007977
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008304
36657231 - 36714031
56801
ENSAPLT00000046297
36655209 - 36718343
63135
ENSAPLT00000026838
36655209 - 36715557
60349
ENSAPLT00000025399
36657231 - 36716083
58853
ENSAPLT00000017192
36655209 - 36711622
56414