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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36684604_36698264_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36684604 - 36698264
Intron Length:
13661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTTGACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTTCTTTGACT
Flanking Amino Acid:
KKEIPDFVKRIQDAASQGLK
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
76.5
0.6
0.8
70.4
35.2
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
82.3
1.1
1
90.81
33.2

Associated Gene:

Gene:
RFTN1
Ensembl Gene ID:
ENSAPLG00000007977
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026838
36655209 - 36715557
60349
ENSAPLT00000025399
36657231 - 36716083
58853
ENSAPLT00000017192
36655209 - 36711622
56414
ENSAPLT00000008304
36657231 - 36714031
56801
ENSAPLT00000046297
36655209 - 36718343
63135