About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36698374_36710364_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36698374 - 36710364
Intron Length:
11991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
GCTGTCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CAGAAAATAATT
Flanking Amino Acid:
FRAVLIKKTERSPKGDIHSE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
77.4
0.62
0.9
73.4
37.1
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
41.1
-0.6
1.9
53.31
41.4

Associated Gene:

Gene:
RFTN1
Ensembl Gene ID:
ENSAPLG00000007977
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026838
36655209 - 36715557
60349
ENSAPLT00000025399
36657231 - 36716083
58853
ENSAPLT00000017192
36655209 - 36711622
56414
ENSAPLT00000008304
36657231 - 36714031
56801
ENSAPLT00000046297
36655209 - 36718343
63135