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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36710552_36710937_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36710552 - 36710937
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
AGATTATTGACC
Flanking Amino Acid:
IVTTIHFRHIAELPGSSAIK
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
40.4
-1.1
3.2
56.3
42.5
Minor BPS
54.2
0.11
1.6
62.46
36.3

Associated Gene:

Gene:
RFTN1
Ensembl Gene ID:
ENSAPLG00000007977
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017192
36655209 - 36711622
56414