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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36710552_36718294_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36710552 - 36718294
Intron Length:
7743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
AGATTATTGACC
Flanking Amino Acid:
SFKKCLLIYLAELPGSSAIK
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
88.1
0.86
0.8
80.3
37.3
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
54.2
0.11
1.6
62.46
36.3

Associated Gene:

Gene:
RFTN1
Ensembl Gene ID:
ENSAPLG00000007977
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046297
36655209 - 36718343
63135