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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36774788_36776102_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36774788 - 36776102
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
AATCTGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAAAA
Flanking Amino Acid:
VVSPLTQYVQTYPYNSPALL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.7
0.6
0.9
69.6
40.7
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
65.1
0.47
1.5
77.07
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007738
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008053
36769193 - 36785873
16681