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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36776631_36780068_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36776631 - 36780068
Intron Length:
3438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
ACTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
AATAACTTATTT
Flanking Amino Acid:
DNVDVQKIVESQINFHGKKL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
69.5
36.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
84
0.76
0.8
81
35.6
Minor 5ss
46.8
-0.3
2.7
60.7
37.9
Minor BPS
51.4
0.12
1.8
69.76
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007738
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008053
36769193 - 36785873
16681