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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36780121_36781507_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
36780121 - 36781507
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ATTGAATTACCT
Flanking Amino Acid:
IITDRTGVSKGYGFVSFLDN
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.1
38.4
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
29.2
-2.4
2.5
25
36.7
Minor BPS
47.9
-0
2.1
72.59
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007738
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008053
36769193 - 36785873
16681