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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36781600_36781859_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36781600 - 36781859
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATTTATA
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AGTTCAAGACTT
Flanking Amino Acid:
TVFVGGIDIRMNEAEIRSYF
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
72.5
38.4
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
86.1
0.81
0.7
85.5
29.2
Minor 5ss
45
-0.5
2.5
51.2
45.4
Minor BPS
42.1
-0.5
2.1
62.66
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007738
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008053
36769193 - 36785873
16681