About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36781995_36785870_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36781995 - 36785870
Intron Length:
3876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATTTGTTTAATT
Flanking Amino Acid:
MSANAEAQCAS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
68.4
36.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
27.7
-2.6
3
31.6
37.6
Minor BPS
70.3
0.72
1.7
85.82
34.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007738
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008053
36769193 - 36785873
16681