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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36793506_36796613_F

Intron Information:

Intron Rank:
137069
Intron Class:
major
Intron Phase:
Intron Coordinates:
36793506 - 36796613
Intron Length:
3108

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
1
88.3
26.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
28.2
-2.5
3.8
40.7
39.2
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021403
36793241 - 36808558
15318