About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36796687_36806477_F

Intron Information:

Intron Rank:
137070
Intron Class:
major
Intron Phase:
Intron Coordinates:
36796687 - 36806477
Intron Length:
9791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTGACTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTTTGTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
67.6
0.4
0.9
58.5
42.7
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
68.1
0.65
2.1
90.53
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046936
36796589 - 36807006
10418
ENSAPLT00000033149
36796491 - 36808153
11663
ENSAPLT00000021403
36793241 - 36808558
15318