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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36806525_36808034_F

Intron Information:

Intron Rank:
137073
Intron Class:
major
Intron Phase:
Intron Coordinates:
36806525 - 36808034
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTATAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TACTCTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
92.6
23.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
73.2
0.52
1
70.4
38.8
Minor 5ss
41.8
-0.9
2.9
57.3
41.2
Minor BPS
63.9
0.52
1.6
77.78
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033149
36796491 - 36808153
11663