Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36808620_36810702_F

Intron Information:

Intron Rank:

142937

Intron Class:

major

Intron Phase:

Intron Coordinates:

36808620 - 36810702

Intron Length:

2083

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCACC

5'SS Class:

strong_major

3'SS Sequence:

TTACCATCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATTAC

U12 Branch Point Sequence:

GCTTTATTACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.9

78.8

35.5

Major BPS

74.8

0.62

1.1

40.5

Major PPT

72.2

0.5

0.9

65.6

34.8

Minor 5ss

40.6

-1

2.8

52.8

44.1

Minor BPS

51.4

0.04

1.9

64.58

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027031

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022652

36808579 - 36811404

2826