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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36854677_36856363_F

Intron Information:

Intron Rank:
142940
Intron Class:
major
Intron Phase:
Intron Coordinates:
36854677 - 36856363
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTGATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.1
0.88
0.6
84.6
23.2
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
61.9
0.45
1.6
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027031
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043328
36808579 - 36856404
47826