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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36871799_36927288_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36871799 - 36927288
Intron Length:
55490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
CTTTTCTTACCC
Flanking Amino Acid:
GIPRRSSIIKDGTKQKRERK
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
76.2
0.59
0.9
69.4
40.5
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
69.3
0.59
1.6
77.35
39.1

Associated Gene:

Gene:
PLCL2
Ensembl Gene ID:
ENSAPLG00000015653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016321
36871260 - 36967916
96657