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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36929776_36932867_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36929776 - 36932867
Intron Length:
3092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TTCCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
GTTACTGTAAAG
Flanking Amino Acid:
DATDLRENMQNAVVSFKELC
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
47.5
-0.3
2.2
58.09
43.3

Associated Gene:

Gene:
PLCL2
Ensembl Gene ID:
ENSAPLG00000015653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016321
36871260 - 36967916
96657