About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36947533_36960882_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
36947533 - 36960882
Intron Length:
13350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTCTCTACA
Flanking Amino Acid:
YEKIVQCQKAAMEFHENLHN
Intron Amino Acid Position:
1023

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.4
0.8
0.7
80
25.6
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
49.3
-0
1.9
64.74
41.3

Associated Gene:

Gene:
PLCL2
Ensembl Gene ID:
ENSAPLG00000015653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016321
36871260 - 36967916
96657