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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_36960993_36967736_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
36960993 - 36967736
Intron Length:
6744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TGTATTCTAACA
Flanking Amino Acid:
SFTWNITILKGQADLLKYAK
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
79
0.72
1
80.3
31.7
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
56
0.19
1.7
69.24
36.7

Associated Gene:

Gene:
PLCL2
Ensembl Gene ID:
ENSAPLG00000015653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016321
36871260 - 36967916
96657