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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37011370_37017558_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37011370 - 37017558
Intron Length:
6189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
GCTGTTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CTAACTTTAAGT
Flanking Amino Acid:
TKQQFISGQQTTTDASTSES
Intron Amino Acid Position:
709

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
79.4
0.66
0.9
72.2
38
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
59.9
0.39
1.7
73.13
43.8

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898
ENSAPLT00000016512
37010967 - 37296089
285123
ENSAPLT00000046012
37011079 - 37251770
240692