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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37018549_37034150_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37018549 - 37034150
Intron Length:
15602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AGTTCTCTAATT
Flanking Amino Acid:
YCAKMMNTHLGNIQEVILQE
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
64.6
0.54
1.6
79.91
35.9

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046012
37011079 - 37251770
240692
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898
ENSAPLT00000016512
37010967 - 37296089
285123