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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37034251_37052587_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37034251 - 37052587
Intron Length:
18337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
GTTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTTGTTTAAAA
Flanking Amino Acid:
QSKTMSRKESEEELEAQISF
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
70.8
35.4
Major BPS
80
0.75
1
78.6
31
Major PPT
82.8
0.74
0.8
78.1
35.3
Minor 5ss
40.3
-1.1
3
60.6
43.7
Minor BPS
61
0.34
1.9
73.23
38.5

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898
ENSAPLT00000016512
37010967 - 37296089
285123
ENSAPLT00000046012
37011079 - 37251770
240692