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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37062936_37067319_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37062936 - 37067319
Intron Length:
4384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GTGTGATGATTT
Flanking Amino Acid:
ARGADLMNKTRASAKAAPLN
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.3
37.4
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
46
-0.4
2.9
65.3
45.9
Minor BPS
40.9
-0.6
2.2
58.66
44.4

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016512
37010967 - 37296089
285123
ENSAPLT00000046012
37011079 - 37251770
240692
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898