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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37067406_37082535_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37067406 - 37082535
Intron Length:
15130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
LRALFLRDPKKNPRPVTHQF
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016512
37010967 - 37296089
285123
ENSAPLT00000046012
37011079 - 37251770
240692
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898