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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37088612_37129125_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37088612 - 37129125
Intron Length:
40514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
GTGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAC
U12 Branch Point Sequence:
CTTTTCTGTTCT
Flanking Amino Acid:
RLEIAPQIYGLRWVRLLFGR
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
78.6
35.6
Major BPS
49.9
-0
1.1
47.4
35.7
Major PPT
86.5
0.82
0.8
84.6
36
Minor 5ss
41.5
-0.9
3.5
68.1
42.7
Minor BPS
40
-0.7
3.6
71.97
44.9

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016512
37010967 - 37296089
285123
ENSAPLT00000046012
37011079 - 37251770
240692
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898