About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37135953_37137397_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37135953 - 37137397
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTGATTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TCTCTGTTGATT
Flanking Amino Acid:
FSHASEAAQPSEEMKVLLNP
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.02
0.9
84.1
34
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
86.5
0.82
0.8
84.7
35.8
Minor 5ss
32.6
-2
4
48.1
47.6
Minor BPS
49.8
0.06
2.1
71.41
40.3

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046012
37011079 - 37251770
240692
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898
ENSAPLT00000016512
37010967 - 37296089
285123