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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37143342_37149108_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37143342 - 37149108
Intron Length:
5767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
TCTTCACTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTTCTTCACT
Flanking Amino Acid:
RAMIEQDVTRTFPEMQYFQQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.3
70.6
41.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.9
0.74
0.8
74
35.7
Minor 5ss
42.6
-0.8
2.5
49.7
40.3
Minor BPS
72.8
0.8
1.7
88.69
36.1

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046012
37011079 - 37251770
240692
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898
ENSAPLT00000016512
37010967 - 37296089
285123