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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37149177_37151931_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37149177 - 37151931
Intron Length:
2755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
TTTTCCGTATTT
Flanking Amino Acid:
INNPLSQDEGSLWNKFFQDK
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
80.3
0.68
0.9
77.3
35.6
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
61.7
0.45
2.2
87.57
38.6

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046012
37011079 - 37251770
240692
ENSAPLT00000026573
37010967 - 37328319
317353
ENSAPLT00000025006
37011079 - 37327976
316898
ENSAPLT00000016512
37010967 - 37296089
285123