About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37169610_37175760_R


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
37169610 - 37175760

Intron Length:
6151

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTACTCTTA

5'SS Class:
major

3'SS Sequence:
TGTTTTGTATTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTATAAC

U12 Branch Point Sequence:
TGTCTTATAACA

Flanking Amino Acid:
LTGFEQHAIQGGSNENGSTH

Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.5
0.51
1.1
68
39.7

Major BPS
77.9
0.69
1
78.3
31.3

Major PPT
74.3
0.55
1
74.6
40

Minor 5ss
46.4
-0.4
3.1
65
46.2

Minor BPS
58.1
0.25
1.6
70.25
35.4

Associated Gene:

Gene:
TBC1D5

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

37011079 - 37251770
240692