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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37197038_37296027_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37197038 - 37296027
Intron Length:
98990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
GAAACACTGAGT
Flanking Amino Acid:
REPPRRLLQYYKYPLVEITL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
39.7
-0.7
2
52.86
41.2

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026573
37010967 - 37328319
317353