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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37197038_37327948_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
37197038 - 37327948
Intron Length:
130911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
GAAACACTGAGT
Flanking Amino Acid:
MPLQAAAAADKYPLVEITL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
85.9
0.81
0.7
84.9
29.9
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
39.7
-0.7
2
52.86
41.2

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025006
37011079 - 37327976
316898