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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37296090_37327948_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
37296090 - 37327948
Intron Length:
31859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATTAAGG
Flanking Amino Acid:
LHATAGSSSSSKTSEGLQKI
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
80
0.75
1
78.6
31
Major PPT
83.8
0.76
0.7
77.9
23.9
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
47.4
-0.3
2.1
56.12
44.3

Associated Gene:

Gene:
TBC1D5
Ensembl Gene ID:
ENSAPLG00000015790
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026573
37010967 - 37328319
317353