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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37495960_37496863_R

Intron Information:

Intron Rank:
134654
Intron Class:
major
Intron Phase:
Intron Coordinates:
37495960 - 37496863
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTCAA
5'SS Class:
major
3'SS Sequence:
TCCCCTTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65.7
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.7
0.51
1
73.3
29.1
Minor 5ss
29.9
-2.3
2.8
33.7
36.5
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019756
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047894
37495959 - 37497880
1922