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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37544707_37547275_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37544707 - 37547275
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TGTACAAAAAAA
Flanking Amino Acid:
AGPWLGAAPQQQQQQQQQQQ
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
60.3
0.26
1
65.5
28
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
41.7
-0.6
2.1
56.98
41.2

Associated Gene:

Gene:
SATB1
Ensembl Gene ID:
ENSAPLG00000009362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009759
37544218 - 37613766
69549