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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37547372_37547870_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37547372 - 37547870
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTCAAT
U12 Branch Point Sequence:
GATGAGTCAATG
Flanking Amino Acid:
IIHVPADQIQSPSPTTLGKG
Intron Amino Acid Position:
594

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
52.9
0.07
1.4
62.5
41.7
Major PPT
83.7
0.76
0.7
82.3
29.8
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
38.8
-0.9
2.3
42.52
42.5

Associated Gene:

Gene:
SATB1
Ensembl Gene ID:
ENSAPLG00000009362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009759
37544218 - 37613766
69549
ENSAPLT00000047546
37546687 - 37613766
67080