Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37548075_37569434_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37548075 - 37569434

Intron Length:

21360

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTATCTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAC

U12 Branch Point Sequence:

GTTATCTTCAAG

Flanking Amino Acid:

FAKVAATKSQGWLCELLRWK

Intron Amino Acid Position:

526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

76.3

33.8

Major BPS

76.8

0.67

0.9

75.9

Major PPT

71.3

0.48

1.1

68.5

42.2

Minor 5ss

40.6

-1

3.4

58.3

46.6

Minor BPS

48.2

-0.2

57.85

43.4

Associated Gene:

Gene:

SATB1

Ensembl Gene ID:

ENSAPLG00000009362

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047546

37546687 - 37613766

67080

ENSAPLT00000029467

37544218 - 37617553

73336

ENSAPLT00000009759

37544218 - 37613766

69549