About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37569591_37577888_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
37569591 - 37577888
Intron Length:
8298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
ACATATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAATG
Flanking Amino Acid:
ISTPPSRPPQVKTATIATER
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
60.2
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71.2
0.48
0.9
62.4
43.3
Minor 5ss
45.3
-0.5
3
58.6
40.7
Minor BPS
68.5
0.44
1.6
75.84
36

Associated Gene:

Gene:
SATB1
Ensembl Gene ID:
ENSAPLG00000009362
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047546
37546687 - 37613766
67080
ENSAPLT00000029467
37544218 - 37617553
73336
ENSAPLT00000009759
37544218 - 37613766
69549