Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_37586809_37589289_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

37586809 - 37589289

Intron Length:

2481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCACCATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

GCTTTTTCAATG

Flanking Amino Acid:

KHFKKAKDMMVEMDSLSELS

Intron Amino Acid Position:

251

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

74.1

38.3

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

75.6

0.58

0.8

70.6

28.9

Minor 5ss

38.3

-1.3

2.8

40.3

45.6

Minor BPS

52.4

-0

1.6

55.29

40.9

Associated Gene:

Gene:

SATB1

Ensembl Gene ID:

ENSAPLG00000009362

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047546

37546687 - 37613766

67080

ENSAPLT00000029467

37544218 - 37617553

73336

ENSAPLT00000009759

37544218 - 37613766

69549